.. IntrAnat documentation master file, created by
   sphinx-quickstart on Tue Feb 16 17:20:34 2021.
   Edited by Manik Bhattacharjee from previous
   documentation by Manik Bhattacharjee, Pierre
   Deman and François Tadel

Welcome to IntrAnat's documentation!
************************************

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   IntranatInstallationBrainVisa5
   user_documentation
   technical_documentation


**IntrAnat** is a free database and visualization software for Intracranial Electroencephalographic (iEEG) data
that allows to locate and register intracerebral electrodes for individual cases as well as
for group studies

IntrAnat is for **research purpose only**, not medical usage. It is provided "as is," Inserm
and its collaborators do not assume any liability or responsibility for
its use.

IntrAnat Electrodes is based on Brainvisa 5.0 (older versions can be used with brainvisa 4.6)
(http://brainvisa.info/ ). It uses some of brainvisa's
toolbox such as morphologist
(http://brainvisa.info/web/morphologist.html ) and cortical surface
analysis (http://brainvisa.info/web/cortical_surface.html ).

It's also using ANTs (http://stnava.github.io/ANTs/ ) and SPM
(http://www.fil.ion.ucl.ac.uk/spm/software/spm12/ ) for multimodality
coregistration and estimation of the deformation field (« patient space »
to « MNI space »).

-  Software presentation: https://f-tract.eu/software/intranat
-  Latest developments:
   https://github.com/ftadel/IntrAnat/tree/brainvisa\_5.0.0dev
-  Installation instructions:
   :ref: `IntranatInstallationBrainVisa5`
   Older installation instructions (Brainvisa 4.6): https://github.com/ftadel/IntrAnat/wiki/Installation
-  User documentation:
   https://github.com/IntrAnatSEEGSoftware/IntrAnat/blob/brainvisa\_4.6/doc/user\_documentation.pdf

Cite publication
================

Please cite this article when using IntrAnat:

https://doi.org/10.3389/fninf.2018.00040

**IntrAnat Electrodes: A Free Database and Visualization Software for Intracranial Electroencephalographic Data Processed
for Case and Group Studies**

Pierre Deman, Manik Bhattacharjee, François Tadel, Anne-Sophie Job, Denis Rivière, Yann Cointepas,
Philippe Kahane and Olivier David




Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`